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CausalCCC
FROM CELL-CELL COMMUNICATION METHODS TO INTEGRATIVE CAUSAL PATHWAYS
Create your network
Name your network
Job name
*
Email
Upload your files
Not sure what to upload ? Follow our vignettes
here
or use our demo dataset below.
Mosaic table
*
Example
Use demo mosaic table
Download demo mosaic table
Reset
Algorithm
*
Miic
Ligand-Receptor edges
*
Example
Use demo L-R edges
Use demo L-R edges
Download demo L-R edges
Reset
State order
Example
Use demo state order
Download demo state order
Reset
Example
Use state order for multiple time series example
Use state order for multiple time series example
Download state order for multiple time series example
Reset
Network layout
Example
Use demo network layout
Use demo network layout
Download demo network layout
Reset
Example
Use network layout for multiple time series example
Use network layout for multiple time series example
Download network layout for multiple time series example
Reset
Advanced Settings
Number of layers
Delta t
Maximum number of nodes
Moving average
Skeleton confidence
Confidence filtering
On
Off
Number of shufflings
Confidence threshold
Orientation confidence
Orientation probability ratio
General
Neff
Seed
Orientation
Yes
No
Propagation
Yes
No
Latent
Yes
No
Orientation only
Allow negative information
Yes
No
Consistent
No
Skeleton
Orientation
Consensus threshold
Maximum number of iterations
KL-distance
Yes
No
True edges
Excluded edges