RNA folding including pseudoknots and "real knots"

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Related Publications

 

Isambert H: The jerky and knotty dynamics of RNA.
Methods, 49(2):189-96 (2009). [review]
Pubmed | ScienceDirectpdf

Xayaphoummine A, Bucher T, Isambert H: Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots.
Nucleic Acids Res, 33:W605-10 (2005).
Pubmed | OXFORDpdfsupp | Kinefold server

Xayaphoummine A, Bucher T, Thalmann F, Isambert H: Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations.
Proc Natl Acad Sci USA, 100(26):15310-5 (2003).
Pubmed | PNASpdf

Isambert H, Siggia ED: Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme.
Proc Natl Acad Sci USA, 97(12):6515-20 (2000).
Pubmed | PNASpdf
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